While I often lump “dpkg/rpm” together since they’re very similar architecturally, their implementation of configuration file management is a small but nontrivial difference. This is because dpkg allows interactivity, rpm does not.
With dpkg, in the case where a file is modified locally by the user (say /etc/httpd/conf/httpd.conf), dpkg will prompt the admin interactively. It only has at this time the modified config file, and the new file. Now, personally I think dpkg prompting in the middle of open heart surgery on your root file system is completely insane. You really must use screen or equivalent if doing remote administration. But being able to see what files changed is useful.
RPM is quite opposite. While it also does open heart surgery, you might see one or two messages related to config files go by in the output spam. At the end, it’s up to you to search for .rpmnew and such in /etc. Of course there does exist tooling on top to detect this after – I’m just talking about the out-of-the-box experience. Furthermore, allowing packagers to create a distinction between %config and %config(noreplace) makes the whole thing very inconsistent from a total system perspective. It’s hard to know what will happen on an upgrade unless you know beforehand what the packager chose.
The handling of /etc for OSTree took me a while of thought. The executive summary is that OSTree requires the existence of /usr/etc which is read-only defaults. Whenever you do an upgrade (more generally, switching trees), OSTree does a basic 3-way merge. It doesn’t attempt to understand the contents of files – if you have modified a config file in any way, that wins. Unlike the simplistic “split partitions” approaches out there, this does mean that you get new default config files, and also any config files that were removed in the new tree also vanish.
Unlike the rpm and dpkg model, OSTree is fully atomic. The /etc I’m talking about on upgrades is a separate copy from your running /etc. That allows you to do interactively run whatever scripts or programs you want to ensure the system is correctly set up for the next boot, with total safety.
Another cool feature enabled by the existence of /usr/etc is ostree admin config-diff. This is something I always wanted from Unix – it can give you, at any time, all of the files you modified in /etc. This makes it easier to replicate and reproduce system state after the fact. Your OS can have a “reset all configuration” button, and revert back to a pristine /etc at any time.
There are of course other systems out there you can layer on top of dpkg/rpm to improve the situation. etckeeper is a popular one. See also this proposal for /etc/defaults in Ubuntu. etckeeper suffers from being glued on after the fact. Furthermore, you don’t really need to keep a history of the upstream defaults in git – the main feature is having a 3 way merge. And /usr/etc is a simple way to implement it – and helps OSTree preserve the “feel” of the traditional Unix. You can just vi /etc/some/configfile.ini any time you want. The config state isn’t stored in a separate partition (e.g. CoreOS mounts theirs at /media/state). But OSTree still provides atomic upgrades as the many image-based upgrade systems out there do.